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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
21
ATAC-seq
18
single cell RNA-seq
11
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
48
DNA accessibility
18
Transcription
11
DNA binding
6
DNA methylation
Target of assay
11
control
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
790
bam
bigWig
559
tsv
233
bed narrowPeak
210
bigBed narrowPeak
189
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
89
txt
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
Organism
172
Homo sapiens
Biosample type
101
tissue
54
primary cell
13
cell line
4
in vitro differentiated cells
Organ
92
bone element
12
heart
10
artery
10
blood vessel
10
vasculature
9
kidney
8
connective tissue
8
epithelium
8
skeleton
6
limb
6
pancreas
3
liver
2
musculature of body
1
eye
Project
127
AMP
45
HPAP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
127
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
88
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
172 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cardiac fibroblast
2
cardiac muscle cell
1
epithelial cell of proximal tubule
1
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
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