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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
DNase-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
28
ChIP-seq
26
total RNA-seq
22
snATAC-seq
Assay category
208
DNA accessibility
60
Transcription
41
DNA methylation
28
DNA binding
Target of assay
18
histone
18
histone modification
10
narrow histone mark
8
broad histone mark
7
control
3
RNA binding protein
3
transcription factor
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
168
bed narrowPeak
161
bam
150
bigWig
134
zippedFastqFolder
130
bigBed narrowPeak
110
bed bed3+
109
bed broadPeak
109
bigBed broadPeak
24
fastq
7
txt
Organism
337
Homo sapiens
Biosample type
176
primary cell
161
tissue
Organ
108
pancreas
100
epithelium
kidney
45
musculature of body
42
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
203
AMP
134
HPAP
Genome assembly (visualization)
153
hg19
130
GRCh38
Lab
139
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
audit script error
month_released!
November, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
337 results
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Clear Filters
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 13 more…
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
muscle of arm
17
muscle of leg
13
+ See 28 more…
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