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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
120
total RNA-seq
65
ChIP-seq
48
single cell RNA-seq
1
Hi-C
Assay category
187
DNA accessibility
168
Transcription
65
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
19
histone
19
histone modification
12
control
11
narrow histone mark
8
broad histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
416
bam
404
bigWig
240
bed narrowPeak
240
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
164
tsv
85
fastq
Organism
421
Homo sapiens
Biosample type
290
tissue
103
primary cell
28
cell line
Organ
161
pancreas
81
kidney
53
epithelium
43
musculature of body
35
heart
32
limb
30
brain
27
blood
27
bodily fluid
20
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
3
liver
2
artery
1
adipose tissue
Project
421
AMP
Genome assembly (visualization)
404
GRCh38
381
hg19
Lab
421
AMP-T2D consortium
Audit category:
32
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
421 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
120
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
pancreatic beta cell
9
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
7
+ See 32 more…
cell line
GM12878
27
HepG2
1
See all biosamples
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