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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
159
total RNA-seq
84
RNA microarray
39
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
235
DNA accessibility
177
Transcription
39
DNA binding
6
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
9
transcription factor
8
broad histone mark
4
RNA binding protein
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
403
bam
374
bigWig
232
bed narrowPeak
209
bigBed narrowPeak
188
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
173
tsv
89
txt
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
Organism
546
Homo sapiens
Biosample type
321
tissue
103
primary cell
96
cell line
26
in vitro differentiated cells
Organ
473
connective tissue
adipose tissue
150
bone element
101
heart
89
kidney
73
vasculature
71
blood vessel
68
artery
52
epithelium
43
musculature of body
38
limb
36
pancreas
30
brain
18
ureter
8
skeleton
7
eye
5
liver
Project
501
AMP
45
HPAP
Genome assembly (visualization)
391
GRCh38
374
hg19
Lab
501
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
154
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
546 results
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Clear Filters
DNase-seq
total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
bone tissue
58
heart
18
kidney
13
5
muscle of arm
17
+ See 47 more…
primary cell
Langerhans cell
27
12
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
6
+ See 20 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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