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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
187
DNase-seq
50
ChIP-seq
45
ATAC-seq
Assay category
232
DNA accessibility
188
Transcription
50
DNA binding
Target of assay
46
histone
46
histone modification
38
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
501
bam
470
bigWig
237
bed narrowPeak
210
bigBed narrowPeak
189
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
50
tagAlign
Organism
470
Homo sapiens
Biosample type
333
tissue
137
primary cell
Organ
172
liver
80
kidney
41
musculature of body
33
heart
32
limb
30
brain
18
epithelium
18
ureter
15
connective tissue
7
vasculature
6
eye
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
425
AMP
45
T1D
Genome assembly (visualization)
447
hg19
417
GRCh38
Lab
425
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
BIOSAMPLE
ASSAY
470 results
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Clear Filters
total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
tissue
liver
143
27
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 42 more…
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