Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
173
DNase-seq
100
ATAC-seq
75
ChIP-seq
1
pCHi-C
Assay category
273
DNA accessibility
190
Transcription
75
DNA binding
Target of assay
44
histone
44
histone modification
36
narrow histone mark
29
control
8
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
481
bam
452
bigWig
219
bed narrowPeak
192
bigBed narrowPeak
189
tsv
173
bed bed3+
173
bed broadPeak
173
bigBed broadPeak
50
tagAlign
Organism
539
Homo sapiens
Biosample type
356
tissue
182
primary cell
1
cell line
Organ
196
liver
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
epithelium
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
494
AMP
45
T1D
Genome assembly (visualization)
435
hg19
399
GRCh38
Lab
494
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
539 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 34 more…
cell line
HepG2
1
See all biosamples
Download