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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
DNase-seq
100
ATAC-seq
35
ChIP-seq
1
pCHi-C
Assay category
287
DNA accessibility
190
Transcription
35
DNA binding
Target of assay
histone
46
histone modification
38
narrow histone mark
31
control
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
455
bam
424
bigWig
191
bed narrowPeak
191
bigBed narrowPeak
189
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
23
tagAlign
Organism
513
Homo sapiens
Biosample type
329
tissue
183
primary cell
1
cell line
Organ
169
liver
80
kidney
35
musculature of body
33
heart
32
limb
30
brain
18
epithelium
18
ureter
10
connective tissue
7
vasculature
6
eye
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
468
AMP
45
T1D
Genome assembly (visualization)
401
hg19
379
GRCh38
Lab
468
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
513 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
23
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
3
B cell
2
2
+ See 46 more…
cell line
HepG2
1
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