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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
31
ChIP-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
399
May, 2021
396
August, 2017
342
November, 2017
341
May, 2020
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
bed narrowPeak
242
bam
230
bigWig
210
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
bigBed broadPeak
134
zippedFastqFolder
24
fastq
7
txt
Organism
231
Homo sapiens
Biosample type
165
primary cell
66
tissue
Organ
104
pancreas
86
epithelium
40
liver
12
connective tissue
12
musculature of body
5
heart
3
eye
3
kidney
Project
134
HPAP
97
AMP
Genome assembly (visualization)
62
hg19
23
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
33
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 6 more…
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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