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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
188
DNase-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
437
DNA binding
189
DNA accessibility
4
Transcription
Target of assay
248
transcription factor
107
histone
107
histone modification
84
control
66
recombinant protein
58
broad histone mark
49
narrow histone mark
41
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
616
bam
549
bigWig
525
bed narrowPeak
523
bigBed narrowPeak
324
fastq
258
bed broadPeak
252
bigBed broadPeak
188
bed bed3+
78
tagAlign
4
tsv
3
tar
Organism
640
Homo sapiens
Biosample type
321
cell line
249
tissue
70
primary cell
Organ
317
liver
121
brain
81
kidney
43
musculature of body
35
heart
32
epithelium
32
limb
24
connective tissue
18
ureter
14
pancreas
13
vasculature
8
blood vessel
7
eye
2
artery
1
adipose tissue
Project
640
AMP
Genome assembly (visualization)
496
GRCh38
474
hg19
Lab
630
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
640 results
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Clear Filters
ChIP-seq
DNase-seq
MeRIP-seq
total RNA-seq
ATAC-seq
cell line
HepG2
315
EndoC_BH1
6
tissue
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
substantia nigra
15
+ See 39 more…
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
osteoblast
1
4
1
astrocyte of the cerebellum
3
1
+ See 18 more…
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