Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
187
DNase-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
437
DNA binding
190
DNA accessibility
56
Transcription
Target of assay
248
transcription factor
107
histone
107
histone modification
79
control
66
recombinant protein
58
broad histone mark
49
narrow histone mark
41
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
610
bam
547
bigWig
523
bed narrowPeak
522
bigBed narrowPeak
365
fastq
257
bed broadPeak
251
bigBed broadPeak
187
bed bed3+
78
tagAlign
19
zippedFastqFolder
3
tar
Organism
683
Homo sapiens
Biosample type
315
cell line
245
tissue
123
primary cell
Organ
317
liver
121
brain
81
kidney
45
epithelium
43
musculature of body
35
heart
32
limb
23
pancreas
18
connective tissue
18
ureter
13
vasculature
8
blood vessel
7
eye
2
artery
1
adipose tissue
Project
624
AMP
59
HPAP
Genome assembly (visualization)
493
GRCh38
468
hg19
Lab
624
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
683 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
substantia nigra
15
+ See 38 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 20 more…
See all biosamples
Download