Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
48
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
10
MeRIP-seq
8
Hi-C
7
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
197
DNA accessibility
69
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
16
control
11
narrow histone mark
8
broad histone mark
5
nucleotide modification
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
306
bam
300
bigWig
219
bed narrowPeak
213
bigBed narrowPeak
192
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
69
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
342
Homo sapiens
Biosample type
244
tissue
92
primary cell
6
cell line
Organ
92
kidney
60
heart
53
musculature of body
48
brain
42
connective tissue
39
epithelium
37
limb
20
pancreas
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
8
eye
5
artery
2
pericardium
Project
342
AMP
Genome assembly (visualization)
295
GRCh38
284
hg19
Lab
332
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
34
inconsistent ontology term
BIOSAMPLE
ASSAY
342 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
MeRIP-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 50 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
osteoblast
1
4
1
+ See 29 more…
cell line
EndoC_BH1
6
See all biosamples
Download