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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
63
ChIP-seq
30
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
single cell RNA-seq
Assay category
203
DNA accessibility
63
DNA binding
31
Transcription
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
13
control
5
nucleotide modification
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
296
bam
287
bigWig
258
bed narrowPeak
225
bigBed narrowPeak
188
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
73
fastq
30
tsv
1
csv
Organism
307
Homo sapiens
Biosample type
167
tissue
134
primary cell
6
cell line
Organ
87
epithelium
86
pancreas
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
24
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
307
AMP
Genome assembly (visualization)
288
GRCh38
265
hg19
Lab
297
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 24 more…
cell line
EndoC_BH1
6
See all biosamples
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