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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
185
DNase-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
198
DNA binding
190
DNA accessibility
89
Transcription
9
DNA methylation
Target of assay
141
histone modification
140
histone
73
broad histone mark
67
narrow histone mark
41
control
16
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
411
bam
402
bigWig
291
bed narrowPeak
234
bigBed narrowPeak
220
bed broadPeak
215
fastq
203
bed bed3+
195
bigBed broadPeak
89
tsv
63
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
479
Homo sapiens
Biosample type
389
tissue
97
primary cell
Organ
192
pancreas
connective tissue
81
kidney
69
musculature of body
58
adipose tissue
56
liver
49
epithelium
35
heart
32
limb
30
brain
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
486
AMP
Genome assembly (visualization)
385
hg19
379
GRCh38
Lab
486
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
486 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
1
89
1
liver
48
1
3
skeletal muscle tissue
22
4
heart
18
muscle of arm
17
+ See 37 more…
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle satellite cell
8
+ See 18 more…
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