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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
DNase-seq
55
ChIP-seq
1
Hi-C
Assay category
154
DNA accessibility
55
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
11
histone
11
histone modification
10
control
7
narrow histone mark
6
RNA binding protein
4
broad histone mark
2
chromatin remodeller
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
209
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
154
bed bed3+
154
bed broadPeak
154
bigBed broadPeak
35
fastq
Organism
210
Homo sapiens
Biosample type
138
tissue
44
primary cell
28
cell line
Organ
81
kidney
musculature of body
35
heart
32
limb
30
brain
27
blood
27
bodily fluid
20
epithelium
18
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
4
pancreas
3
liver
2
artery
1
adipose tissue
Project
210
AMP
Genome assembly (visualization)
199
GRCh38
176
hg19
Lab
210
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
1
inconsistent control
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
210 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
kidney
13
brain
12
renal cortex interstitium
11
renal pelvis
10
+ See 31 more…
primary cell
cardiac fibroblast
3
5
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
retinal pigment epithelial cell
1
3
+ See 15 more…
cell line
GM12878
27
HepG2
1
See all biosamples
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