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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
19
DNase-seq
3
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
30
DNA binding
21
DNA accessibility
3
Transcription
1
3D chromatin structure
Target of assay
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
52
bam
43
bigWig
39
bed narrowPeak
32
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
16
bed bed3+
3
tsv
1
hic
1
tar
Organism
55
Homo sapiens
Biosample type
53
primary cell
2
cell line
Organ
116
brain
111
kidney
101
limb
55
epithelium
54
vasculature
52
blood vessel
43
heart
43
musculature of body
42
nerve
28
artery
28
eye
22
connective tissue
22
pancreas
21
vein
18
ureter
9
liver
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
55
AMP
Genome assembly (visualization)
41
GRCh38
39
hg19
Lab
55
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
10
1
kidney tubule cell
3
1
retinal pigment epithelial cell
3
1
kidney glomerular epithelial cell
2
1
+ See 9 more…
cell line
glomerular visceral epithelial cell
1
1
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