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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
18
DNase-seq
2
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
30
DNA binding
20
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
61
September, 2018
51
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
December, 2017
19
September, 2020
13
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
May, 2019
5
May, 2021
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
50
bam
41
bigWig
38
bed narrowPeak
31
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
16
bed bed3+
2
tsv
1
hic
1
tar
Organism
53
Homo sapiens
Biosample type
53
primary cell
cell line
Organ
116
brain
101
limb
96
kidney
54
vasculature
53
epithelium
52
blood vessel
43
heart
43
musculature of body
42
nerve
28
artery
28
eye
22
connective tissue
21
vein
18
ureter
9
liver
7
pancreas
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
53
AMP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
53
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
10
1
kidney tubule cell
3
1
retinal pigment epithelial cell
3
1
kidney glomerular epithelial cell
2
1
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