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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
19
DNase-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
30
DNA binding
21
DNA accessibility
1
3D chromatin structure
Target of assay
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
50
February, 2023
35
September, 2018
32
October, 2019
29
August, 2017
20
June, 2019
20
May, 2021
19
December, 2017
19
September, 2020
15
November, 2019
8
July, 2019
7
August, 2020
6
August, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
March, 2020
3
October, 2022
Available data
52
bam
43
bigWig
39
bed narrowPeak
32
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
16
bed bed3+
tsv
1
hic
1
tar
Organism
52
Homo sapiens
Biosample type
51
primary cell
1
cell line
Organ
115
brain
105
kidney
97
limb
54
vasculature
52
blood vessel
52
epithelium
43
musculature of body
41
heart
38
nerve
28
artery
28
eye
22
connective tissue
22
pancreas
21
vein
18
ureter
8
liver
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
52
AMP
Genome assembly (visualization)
38
GRCh38
36
hg19
Lab
52
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
10
1
retinal pigment epithelial cell
3
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
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cell line
glomerular visceral epithelial cell
1
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