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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ATAC-seq
39
total RNA-seq
16
DNase-seq
6
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
63
DNA accessibility
39
Transcription
6
DNA binding
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
98
February, 2021
87
February, 2023
80
May, 2022
61
October, 2019
61
September, 2018
33
April, 2018
33
July, 2018
29
August, 2017
26
May, 2021
22
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
15
July, 2019
10
May, 2019
8
August, 2021
7
August, 2020
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
February, 2020
2
October, 2018
1
June, 2018
Available data
67
bed narrowPeak
37
fastq
22
bam
20
bigBed narrowPeak
20
bigWig
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
2
tsv
Organism
108
Homo sapiens
Biosample type
57
primary cell
51
tissue
1
cell line
Organ
81
kidney
72
epithelium
71
heart
60
pancreas
43
musculature of body
42
vasculature
40
blood vessel
38
eye
37
artery
32
connective tissue
32
limb
31
brain
18
ureter
8
bone element
8
skeleton
2
adipose tissue
2
liver
Project
72
AMP
37
HPAP
Genome assembly (visualization)
55
GRCh38
26
hg19
Lab
72
AMP-T2D consortium
37
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
epithelial cell of proximal tubule
1
3
retinal pigment epithelial cell
1
3
glomerular visceral epithelial cell
2
+ See 9 more…
tissue
coronary artery
35
2
pigmented layer of retina
12
2
cell line
EndoC_BH1
1
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