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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
31
total RNA-seq
24
pCHi-C
18
ATAC-seq
8
Hi-C
4
DNase-seq
Assay category
197
DNA binding
31
Transcription
22
DNA accessibility
8
3D chromatin structure
Target of assay
170
histone
170
histone modification
131
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
195
bam
171
bigWig
153
bed narrowPeak
49
tagAlign
47
bigBed narrowPeak
36
tsv
8
bedpe bed3+
8
hic
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
282
tissue
41
cell line
35
primary cell
16
in vitro differentiated cells
4
stem cell
Organ
88
brain
69
limb
42
nerve
29
blood vessel
29
vasculature
26
artery
21
eye
15
heart
12
pancreas
9
liver
5
gonad
5
musculature of body
5
ovary
4
kidney
3
connective tissue
2
adipose tissue
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
278
AMP
4
T1D
Genome assembly (visualization)
181
hg19
170
GRCh38
Lab
282
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
23
16
4
15
tibial nerve
35
4
1
2
tibial artery
23
1
2
liver
5
2
1
1
heart
5
2
1
brain
5
1
psoas muscle
2
1
2
kidney
4
superior frontal gyrus
4
aorta
1
1
1
central medial thalamic nucleus
3
heart left ventricle
1
1
1
heart right ventricle
1
1
1
middle temporal gyrus
3
pancreas
1
1
1
adipose tissue
1
1
angular gyrus
2
anterior cingulate gyrus
2
cerebellum (Hemisphere)
2
gyrus rectus
2
medial globus pallidus
2
middle frontal gyrus
2
occipital pole
2
posterior cingulate gyrus
2
precuneus cortex
2
primary motor cortex
2
putamen
2
secondary auditory cortex
2
superior parietal cortex
2
supramarginal gyrus
2
white matter
2
Ammon's horn
1
adrenal gland
1
agranular insular cortex
1
amygdala
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
bladder (urinary bladder)
1
body of caudate nucleus
1
brodmann area 43
1
claustrum of brain
1
cuneus
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsal plus ventral thalamus
1
dorsolateral prefrontal cortex
1
esophagus
1
external globus pallidus
1
fastigial nucleus
1
frontal pole
1
gastric (mucosa of stomach)
1
head of caudate nucleus
1
hippocampal gyrus
1
hypothalamus
1
inferior frontal gyrus
1
inferior temporal gyrus
1
insular gyrus
1
lateral hypothalamic area
1
lateral occipital gyrus
1
lateral septal nucleus
1
layer of hippocampus
1
lingual gyrus
1
locus coeruleus
1
lung
1
mammillary body
1
medial dorsal nucleus of thalamus
1
medial geniculate nucleus
1
medial segment of precentral gyrus
1
midbrain tectum
1
myelencephalon
1
nucleus accumbens
1
olivary body
1
orbital gyrus
1
ovary
1
paraterminal gyrus
1
pineal body
1
piriform cortex
1
pituitary gland
1
planum polare
1
planum temporale
1
pons
1
postcentral gyrus
1
primary somatosensory cortex
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
right cardiac atrium
1
sigmoid colon
1
small intestine
1
spleen
1
subiculum
1
substantia nigra
1
substantia nigra pars reticulata
1
subthalamic nucleus
1
superior occipital gyrus
1
suprachiasmatic nucleus
1
temporal pole
1
thymus
1
transverse temporal gyrus
1
uncus of parahippocampal gyrus
1
ventral anterior nucleus of thalamus
1
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