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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
9
Hi-C
3
ATAC-seq
3
WGBS
Assay category
18
DNA methylation
9
3D chromatin structure
3
DNA accessibility
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
85
bigWig
bam
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
30
Homo sapiens
Biosample type
17
tissue
13
primary cell
Organ
8
epithelium
6
pancreas
5
brain
5
musculature of body
4
heart
4
kidney
4
limb
3
liver
3
vasculature
2
blood vessel
2
connective tissue
1
eye
1
pericardium
Project
30
AMP
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
26
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
30 results
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Clear Filters
RRBS
Hi-C
ATAC-seq
WGBS
tissue
islet of Langerhans
1
1
3
gastrocnemius medialis
4
heart left ventricle
1
2
brain
1
kidney
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
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