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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
20
total RNA-seq
13
ChIP-seq
3
Hi-C
Assay category
23
DNA accessibility
20
Transcription
13
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
October, 2017
4
August, 2021
4
June, 2019
4
March, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
54
bam
31
bed narrowPeak
31
bigWig
20
tsv
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
Organism
59
Homo sapiens
Biosample type
43
tissue
16
cell line
Organ
59
pancreas
16
epithelium
1
adipose tissue
1
connective tissue
Project
59
AMP
Genome assembly (visualization)
56
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
Maike Sander, UCSD
Audit category:
16
inconsistent ontology term
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
59 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
22
19
2
cell line
EndoC_BH1
1
1
13
1
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