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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
32
pCHi-C
15
total RNA-seq
12
Hi-C
8
ATAC-seq
Assay category
37
DNA binding
15
Transcription
12
3D chromatin structure
8
DNA accessibility
Target of assay
28
transcription factor
4
control
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
51
bam
50
bigWig
45
tsv
36
fastq
33
bed narrowPeak
30
bigBed narrowPeak
12
bedpe bed3+
11
hic
2
ibed
1
bed broadPeak
1
bedpe
Organism
104
Homo sapiens
Biosample type
52
tissue
39
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
27
blood
27
bodily fluid
19
pancreas
8
spleen
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
liver
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
97
AMP
7
T1D
Genome assembly (visualization)
65
hg19
48
GRCh38
Lab
99
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
17
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
2
1
6
spleen
7
1
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
cell line
GM12878
27
EndoC_BH1
1
2
2
early embryonic cell
2
HepG2
1
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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