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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
27
snATAC-seq
26
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
563
Transcription
53
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
573
bam
559
tsv
551
bigWig
89
txt
46
fastq
23
bed narrowPeak
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
712
Homo sapiens
Biosample type
550
tissue
88
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
37
pancreas
32
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
667
AMP
45
HPAP
Genome assembly (visualization)
572
hg19
565
GRCh38
Lab
662
AMP-T2D consortium
45
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
712 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
4
1
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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