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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
total RNA-seq
16
small RNA-seq
10
WGBS
8
ATAC-seq
6
RRBS
5
Hi-C
2
FAIRE-seq
Assay category
44
Transcription
16
DNA methylation
10
DNA accessibility
5
3D chromatin structure
Date released
601
February, 2021
397
November, 2017
352
August, 2017
309
August, 2021
254
October, 2019
194
May, 2020
193
May, 2021
160
June, 2019
120
July, 2018
94
December, 2017
87
November, 2018
82
February, 2023
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
61
November, 2019
60
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
58
bam
57
bigWig
44
tsv
13
bed bedMethyl
13
bigBed bedMethyl
5
bed narrowPeak
2
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
75
Homo sapiens
Biosample type
75
tissue
primary cell
Organ
20
heart
11
brain
11
pancreas
10
adipose tissue
10
connective tissue
8
liver
7
blood vessel
7
musculature of body
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
75
AMP
Genome assembly (visualization)
58
hg19
57
GRCh38
Lab
70
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
biosample_type!
primary cell
organ_slims!
vasculature
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
small RNA-seq
WGBS
ATAC-seq
RRBS
Hi-C
FAIRE-seq
tissue
heart left ventricle
2
4
2
1
islet of Langerhans
4
1
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
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