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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
70
total RNA-seq
24
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
438
DNA binding
92
Transcription
27
DNA methylation
26
DNA accessibility
9
3D chromatin structure
Target of assay
244
transcription factor
120
histone
120
histone modification
74
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
547
bam
491
bigWig
398
fastq
366
bed narrowPeak
328
bigBed narrowPeak
91
tsv
78
tagAlign
71
bed broadPeak
64
bigBed broadPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
tar
1
bedpe
1
csv
1
hic
Organism
592
Homo sapiens
Biosample type
315
cell line
164
tissue
113
primary cell
Organ
325
liver
109
brain
83
pancreas
80
epithelium
25
heart
18
connective tissue
18
vasculature
14
blood vessel
12
adipose tissue
11
kidney
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
592
AMP
Genome assembly (visualization)
447
hg19
433
GRCh38
Lab
587
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
592 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 31 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 26 more…
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