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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
16
ChIP-seq
15
RRBS
12
WGBS
9
ATAC-seq
9
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
27
DNA methylation
16
DNA binding
11
DNA accessibility
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
5
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
159
bam
132
bigWig
67
tsv
fastq
52
bed narrowPeak
47
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
1
bed broadPeak
1
bedpe
1
hic
Organism
128
Homo sapiens
Biosample type
97
tissue
31
primary cell
Organ
26
pancreas
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
128
AMP
Genome assembly (visualization)
108
hg19
95
GRCh38
Lab
124
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
128 results
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total RNA-seq
small RNA-seq
ChIP-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
endocrine pancreas
16
heart left ventricle
2
1
4
2
islet of Langerhans
1
3
1
omental fat pad
4
1
right lobe of liver
2
2
1
+ See 27 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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