Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
41
total RNA-seq
17
small RNA-seq
12
WGBS
11
RRBS
10
ATAC-seq
9
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
74
DNA binding
61
Transcription
23
DNA methylation
11
DNA accessibility
9
3D chromatin structure
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
152
bam
125
bigWig
61
fastq
61
tsv
51
bed narrowPeak
46
bigBed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
4
bed bed3+
4
hdf5
1
bed broadPeak
1
bedpe
1
hic
Organism
178
Homo sapiens
Biosample type
152
tissue
26
primary cell
Organ
64
pancreas
41
connective tissue
35
adipose tissue
25
heart
18
brain
15
epithelium
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
178
AMP
Genome assembly (visualization)
130
hg19
122
GRCh38
Lab
173
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
kidney
BIOSAMPLE
ASSAY
178 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
4
1
2
+ See 25 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
+ See 17 more…
See all biosamples
Download