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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
total RNA-seq
43
ChIP-seq
17
ATAC-seq
Assay category
88
Transcription
43
DNA binding
17
DNA accessibility
Target of assay
21
histone
21
histone modification
16
transcription factor
11
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
0
March, 2019
Available data
92
bigWig
85
bam
79
tsv
7
bed narrowPeak
6
tagAlign
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
txt
Organism
148
Homo sapiens
Biosample type
294
primary cell
148
in vitro differentiated cells
140
tissue
27
cell line
Organ
14
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
148
AMP
Genome assembly (visualization)
101
hg19
84
GRCh38
Lab
98
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
73
inconsistent ontology term
BIOSAMPLE
ASSAY
148 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
induced pluripotent stem cell
9
chondrocyte
5
immature adipocyte
2
2
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