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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
105
ChIP-seq
4
ATAC-seq
2
total RNA-seq
1
Hi-C
Assay category
191
DNA accessibility
105
DNA binding
2
Transcription
1
3D chromatin structure
Target of assay
49
histone
49
histone modification
37
control
27
broad histone mark
22
narrow histone mark
19
transcription factor
15
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
295
bam
257
bigWig
255
bed narrowPeak
255
bigBed narrowPeak
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
61
fastq
2
tsv
1
bedpe
1
hic
Organism
299
Homo sapiens
Biosample type
242
tissue
57
primary cell
Organ
81
kidney
62
pancreas
43
musculature of body
41
connective tissue
35
heart
32
limb
30
brain
24
adipose tissue
22
epithelium
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
Project
299
AMP
Genome assembly (visualization)
259
GRCh38
237
hg19
Lab
294
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
26
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
299 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
body of pancreas
2
33
heart
18
muscle of arm
17
endocrine pancreas
16
kidney
13
+ See 37 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
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