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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
15
total RNA-seq
12
ATAC-seq
10
Hi-C
Assay category
DNA binding
15
Transcription
12
DNA accessibility
10
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
45
tsv
25
bigWig
20
bam
12
bedpe bed3+
10
hic
8
fastq
6
bed narrowPeak
2
ibed
1
bed broadPeak
Organism
69
Homo sapiens
Biosample type
46
tissue
10
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
16
pancreas
7
heart
5
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
brain
3
connective tissue
3
liver
2
adipose tissue
2
intestine
2
kidney
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
65
AMP
4
T1D
Genome assembly (visualization)
36
hg19
21
GRCh38
Lab
68
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
16
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
69 results
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pCHi-C
total RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
2
3
psoas muscle
1
2
2
body of pancreas
4
aorta
1
1
1
heart left ventricle
1
1
1
+ See 19 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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