Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
104
total RNA-seq
32
pCHi-C
10
Hi-C
9
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
104
Transcription
15
DNA accessibility
15
DNA methylation
10
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
134
tsv
118
bigWig
114
bam
106
fastq
12
bedpe bed3+
10
bed narrowPeak
10
bigBed narrowPeak
10
hic
6
bed bedMethyl
6
bigBed bedMethyl
2
bed broadPeak
2
bigBed broadPeak
2
ibed
Organism
176
Homo sapiens
Biosample type
146
tissue
10
cell line
9
in vitro differentiated cells
7
primary cell
4
stem cell
Organ
105
pancreas
10
connective tissue
9
liver
9
musculature of body
8
adipose tissue
8
epithelium
7
heart
4
blood vessel
4
vasculature
2
brain
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
172
AMP
4
T1D
Genome assembly (visualization)
132
hg19
111
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
176 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
pCHi-C
Hi-C
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
91
2
1
1
liver
1
1
1
3
1
psoas muscle
2
1
2
adipose tissue
1
3
skeletal muscle tissue
4
+ See 20 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
adipocyte
1
embryonic stem cell
1
primary cell
skeletal muscle myoblast
1
2
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download