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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
pCHi-C
5
ChIP-seq
4
total RNA-seq
2
ATAC-seq
2
Hi-C
Assay category
5
DNA binding
4
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
3
histone
3
histone modification
3
narrow histone mark
2
control
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
16
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
10
tsv
9
bam
9
bigWig
4
bedpe bed3+
4
fastq
3
bed narrowPeak
2
hic
2
ibed
Organism
20
Homo sapiens
Biosample type
11
in vitro differentiated cells
7
cell line
1
stem cell
1
tissue
Organ
9
epithelium
5
pancreas
4
embryo
2
kidney
1
connective tissue
stomach
1
urinary bladder
Project
17
AMP
3
T1D
Genome assembly (visualization)
13
hg19
7
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
27
inconsistent control
20
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
stomach
BIOSAMPLE
ASSAY
20 results
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Clear Filters
pCHi-C
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
in vitro differentiated cells
Hepatic endoderm
4
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
cell line
EndoC_BH1
1
2
2
RCC 7860 VHL
1
RCC 7860 vector
1
stem cell
mesenchymal stem cell
1
tissue
bladder (urinary bladder)
1
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