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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
28
pCHi-C
10
MeRIP-seq
8
Hi-C
5
ATAC-seq
3
ChIP-seq
1
DNase-seq
Assay category
42
Transcription
8
3D chromatin structure
6
DNA accessibility
3
DNA binding
Target of assay
5
control
5
nucleotide modification
3
histone
3
histone modification
3
narrow histone mark
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
70
tsv
23
bigWig
20
bam
8
bedpe bed3+
8
hic
5
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
97
Homo sapiens
Biosample type
69
tissue
17
cell line
in vitro differentiated cells
7
primary cell
4
stem cell
Organ
25
pancreas
14
brain
12
epithelium
10
connective tissue
10
heart
7
blood vessel
7
musculature of body
7
vasculature
4
liver
3
adipose tissue
3
limb
2
artery
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
90
AMP
7
T1D
Genome assembly (visualization)
32
hg19
20
GRCh38
Lab
87
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
17
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
pCHi-C
MeRIP-seq
Hi-C
ATAC-seq
ChIP-seq
DNase-seq
tissue
islet of Langerhans
2
4
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 40 more…
cell line
EndoC_BH1
2
6
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
primary cell
osteoblast
4
1
1
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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