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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
107
ATAC-seq
53
ChIP-seq
29
pCHi-C
8
Hi-C
1
GRO-seq
Assay category
203
Transcription
107
DNA accessibility
53
DNA binding
8
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
297
bam
282
bigWig
230
tsv
50
tagAlign
30
bed narrowPeak
8
bedpe bed3+
8
hic
1
fastq
Organism
401
Homo sapiens
Biosample type
235
tissue
148
primary cell
13
cell line
in vitro differentiated cells
5
stem cell
Organ
197
liver
14
pancreas
7
heart
6
epithelium
6
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
349
AMP
52
T1D
Genome assembly (visualization)
289
hg19
221
GRCh38
1
hg18
Lab
356
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
401 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
GRO-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 17 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
GM12878
1
HepG2
1
MCF-7
1
+ See 3 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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