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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
559
total RNA-seq
84
RNA microarray
33
pCHi-C
25
ATAC-seq
11
ChIP-seq
9
Hi-C
6
single cell RNA-seq
3
snDrop-seq
Assay category
565
Transcription
25
DNA accessibility
11
DNA binding
9
3D chromatin structure
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
597
tsv
585
bam
569
bigWig
89
txt
25
bed narrowPeak
11
bedpe bed3+
9
hic
8
tagAlign
6
csv
4
bed bedgraph
2
ibed
1
bed bed3
1
bed bed3+
Organism
730
Homo sapiens
Biosample type
585
tissue
107
cell line
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
454
connective tissue
387
adipose tissue
150
bone element
73
heart
69
blood vessel
69
vasculature
66
artery
40
pancreas
31
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
723
AMP
7
T1D
Genome assembly (visualization)
602
hg19
582
GRCh38
Lab
730
AMP-T2D consortium
Audit category:
145
inconsistent ontology term
5
audit script error
1
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
730 results
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total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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