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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
20
pCHi-C
9
total RNA-seq
7
Hi-C
2
ATAC-seq
Assay category
50
DNA binding
9
Transcription
7
3D chromatin structure
2
DNA accessibility
Target of assay
31
transcription factor
12
control
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
57
bam
48
fastq
47
bigWig
38
bed narrowPeak
36
bigBed narrowPeak
28
tsv
7
bedpe bed3+
7
hic
Organism
88
Homo sapiens
Biosample type
88
tissue
51
in vitro differentiated cells
11
cell line
7
stem cell
1
primary cell
Organ
51
liver
9
pancreas
7
heart
5
musculature of body
3
blood vessel
3
vasculature
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
84
AMP
4
T1D
Genome assembly (visualization)
54
hg19
45
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
liver
38
1
1
1
right lobe of liver
10
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
pancreas
1
1
1
Ammon's horn
1
adipose tissue
1
adrenal gland
1
bladder (urinary bladder)
1
dorsolateral prefrontal cortex
1
esophagus
1
gastric (mucosa of stomach)
1
lung
1
ovary
1
right cardiac atrium
1
sigmoid colon
1
small intestine
1
spleen
1
thymus
1
See all biosamples
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