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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
pCHi-C
11
total RNA-seq
2
ATAC-seq
2
ChIP-seq
Assay category
11
Transcription
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
314
August, 2021
309
May, 2021
289
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
39
March, 2020
38
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
2
June, 2018
1
August, 2022
1
October, 2022
Available data
34
tsv
13
bigWig
11
bam
8
bedpe bed3+
hic
2
bed narrowPeak
Organism
39
Homo sapiens
Biosample type
31
tissue
4
cell line
3
stem cell
1
in vitro differentiated cells
Organ
8
pancreas
5
heart
3
musculature of body
2
blood vessel
2
brain
2
intestine
2
liver
2
vasculature
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
thymus
Project
35
AMP
4
T1D
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
hic
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
39 results
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pCHi-C
total RNA-seq
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 14 more…
cell line
early embryonic cell
2
MCF-7
1
fibroblast cell line
1
stem cell
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
in vitro differentiated cells
embryonic stem cell
1
See all biosamples
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