Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
32
pCHi-C
15
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
83
DNA binding
15
Transcription
10
3D chromatin structure
4
DNA accessibility
Target of assay
63
histone
63
histone modification
37
broad histone mark
26
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
95
bam
85
bigWig
68
bed narrowPeak
64
bigBed narrowPeak
45
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
144
Homo sapiens
Biosample type
120
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
64
heart
25
kidney
14
pancreas
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
137
AMP
7
T1D
Genome assembly (visualization)
97
hg19
80
GRCh38
Lab
144
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
heart left ventricle
35
1
1
1
kidney
23
heart right ventricle
13
1
1
1
heart
9
islet of Langerhans
2
2
2
+ See 18 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
Download