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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
10
Hi-C
2
ATAC-seq
2
pCHi-C
2
total RNA-seq
Assay category
83
DNA binding
10
3D chromatin structure
2
DNA accessibility
2
Transcription
Target of assay
63
histone
63
histone modification
37
broad histone mark
26
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
95
bam
85
bigWig
68
bed narrowPeak
64
bigBed narrowPeak
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
99
Homo sapiens
Biosample type
92
tissue
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
59
heart
23
kidney
8
pancreas
3
epithelium
2
blood vessel
2
musculature of body
2
vasculature
1
liver
1
vein
Project
94
AMP
5
T1D
Genome assembly (visualization)
82
hg19
67
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
January, 2018
files.file_type!
tsv
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
Hi-C
ATAC-seq
pCHi-C
total RNA-seq
tissue
heart left ventricle
35
1
kidney
23
heart right ventricle
13
1
heart
9
islet of Langerhans
2
1
2
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
cell line
EndoC_BH1
1
1
primary cell
endothelial cell of umbilical vein
1
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