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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
34
pCHi-C
26
ATAC-seq
11
ChIP-seq
10
Hi-C
6
single cell RNA-seq
3
snDrop-seq
Assay category
566
Transcription
26
DNA accessibility
11
DNA binding
10
3D chromatin structure
Target of assay
5
transcription factor
3
control
3
histone
3
histone modification
3
narrow histone mark
Date released
670
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
598
tsv
588
bam
571
bigWig
89
txt
26
bed narrowPeak
12
bedpe bed3+
10
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
734
Homo sapiens
Biosample type
585
tissue
107
cell line
34
in vitro differentiated cells
4
primary cell
4
stem cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
40
pancreas
32
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
727
AMP
7
T1D
Genome assembly (visualization)
606
hg19
584
GRCh38
Lab
734
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
145
inconsistent ontology term
5
audit script error
1
inconsistent replicate
month_released!
November, 2019
BIOSAMPLE
ASSAY
734 results
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total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
osteoblast
1
1
1
endothelial cell of umbilical vein
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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