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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
total RNA-seq
22
ChIP-seq
16
ATAC-seq
1
Hi-C
Assay category
28
Transcription
22
DNA binding
16
DNA accessibility
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
Date released
80
May, 2022
61
September, 2018
52
February, 2023
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
66
bigWig
64
bam
61
fastq
36
bed narrowPeak
29
tsv
14
bigBed narrowPeak
1
bedpe bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
62
primary cell
5
cell line
Organ
86
pancreas
67
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
64
AMP
3
T1D
Genome assembly (visualization)
67
hg19
64
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
endothelial cell of umbilical vein
1
cell line
EndoC_BH1
2
1
2
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