Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
83
ChIP-seq
48
single cell RNA-seq
32
pCHi-C
10
Hi-C
4
ATAC-seq
Assay category
183
Transcription
83
DNA binding
10
3D chromatin structure
4
DNA accessibility
Target of assay
63
histone
63
histone modification
37
broad histone mark
26
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
259
bam
249
bigWig
209
tsv
68
bed narrowPeak
64
bigBed narrowPeak
50
fastq
12
bedpe bed3+
10
hic
2
ibed
Organism
312
Homo sapiens
Biosample type
240
tissue
49
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
171
pancreas
64
heart
39
epithelium
25
kidney
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
305
AMP
7
T1D
Genome assembly (visualization)
261
hg19
244
GRCh38
Lab
312
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
Hi-C
ATAC-seq
tissue
islet of Langerhans
122
2
2
heart left ventricle
1
35
1
1
kidney
23
heart right ventricle
1
13
1
1
heart
9
+ See 18 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 11 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download