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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
20
total RNA-seq
10
Hi-C
9
ATAC-seq
9
ChIP-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
23
Transcription
10
3D chromatin structure
9
DNA accessibility
9
DNA binding
Target of assay
6
control
3
histone
3
histone modification
3
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
54
tsv
32
bam
30
bigWig
12
bedpe bed3+
11
fastq
10
hic
8
bed narrowPeak
5
bigBed narrowPeak
2
bed bed3+
2
ibed
Organism
85
Homo sapiens
Biosample type
49
tissue
11
cell line
11
primary cell
10
in vitro differentiated cells
4
stem cell
Organ
25
pancreas
17
epithelium
8
liver
7
heart
5
kidney
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
78
AMP
7
T1D
Genome assembly (visualization)
44
hg19
28
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
4
audit script error
BIOSAMPLE
ASSAY
85 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
single cell RNA-seq
RNA microarray
tissue
islet of Langerhans
2
2
8
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 19 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
primary cell
hepatocyte
5
pancreatic alpha cell
2
pancreatic beta cell
2
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
2
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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