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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
59
ChIP-seq
32
pCHi-C
20
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
191
DNA accessibility
59
DNA binding
20
Transcription
10
3D chromatin structure
Target of assay
29
histone
29
histone modification
18
transcription factor
17
narrow histone mark
12
broad histone mark
12
control
10
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
264
bam
256
bigWig
234
bed narrowPeak
231
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
50
tsv
30
fastq
12
bedpe bed3+
10
hic
2
ibed
Organism
312
Homo sapiens
Biosample type
210
tissue
56
primary cell
34
cell line
8
in vitro differentiated cells
4
stem cell
Organ
83
kidney
48
musculature of body
42
heart
32
brain
32
limb
26
epithelium
20
connective tissue
18
blood
18
bodily fluid
18
pancreas
18
ureter
11
vasculature
10
liver
9
blood vessel
8
spleen
7
eye
2
adipose tissue
2
artery
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
305
AMP
7
T1D
Genome assembly (visualization)
252
GRCh38
245
hg19
Lab
312
AMP-T2D consortium
Audit category:
43
inconsistent ontology term
BIOSAMPLE
ASSAY
312 results
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Clear Filters
DNase-seq
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 51 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
cell line
GM12878
18
EndoC_BH1
1
2
2
HepG2
5
early embryonic cell
2
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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