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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
11
total RNA-seq
10
Hi-C
4
ATAC-seq
Assay category
11
Transcription
10
3D chromatin structure
4
DNA accessibility
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
0
January, 2021
Available data
43
tsv
15
bigWig
12
bedpe bed3+
11
bam
10
hic
2
ibed
Organism
57
Homo sapiens
Biosample type
36
tissue
8
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
7
heart
7
pancreas
5
musculature of body
4
blood vessel
4
vasculature
3
epithelium
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
57
AMP
T1D
Genome assembly (visualization)
27
hg19
11
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
57 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
tissue
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
liver
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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