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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
pCHi-C
16
snATAC-seq
9
total RNA-seq
8
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
18
DNA accessibility
9
Transcription
8
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
593
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
41
March, 2020
40
May, 2024
40
November, 2019
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
28
tsv
11
bigWig
9
bam
8
bedpe bed3+
8
hic
2
bed narrowPeak
Organism
57
Homo sapiens
Biosample type
48
tissue
11
cell line
9
primary cell
8
in vitro differentiated cells
4
stem cell
Organ
17
pancreas
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
connective tissue
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
37
AMP
20
T1D
Genome assembly (visualization)
19
hg19
9
GRCh38
Lab
41
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
57 results
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Clear Filters
pCHi-C
snATAC-seq
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
4
2
2
2
pancreas
1
4
1
1
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
See all biosamples
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