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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
32
pCHi-C
16
snATAC-seq
15
total RNA-seq
11
Hi-C
4
ATAC-seq
Assay category
37
DNA binding
20
DNA accessibility
15
Transcription
11
3D chromatin structure
Target of assay
28
transcription factor
4
control
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
50
bam
50
bigWig
45
tsv
35
fastq
33
bed narrowPeak
30
bigBed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
115
Homo sapiens
Biosample type
55
tissue
39
cell line
9
primary cell
8
in vitro differentiated cells
4
stem cell
Organ
35
blood
35
bodily fluid
22
pancreas
8
spleen
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
liver
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
92
AMP
23
T1D
Genome assembly (visualization)
62
hg19
46
GRCh38
Lab
99
AMP-T2D consortium
16
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
4
2
2
spleen
7
1
pancreas
1
4
1
1
psoas muscle
1
2
2
aorta
1
1
1
+ See 16 more…
cell line
GM12878
27
EndoC_BH1
1
2
2
early embryonic cell
2
HepG2
1
MCF-7
1
+ See 3 more…
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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