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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
snATAC-seq
6
total RNA-seq
4
ATAC-seq
3
ChIP-seq
3
Hi-C
2
pCHi-C
Assay category
12
DNA accessibility
6
Transcription
3
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
98
February, 2021
91
February, 2023
72
September, 2018
65
October, 2019
61
May, 2021
55
November, 2019
53
October, 2018
52
May, 2019
39
April, 2018
19
September, 2020
18
March, 2020
17
July, 2019
11
September, 2017
10
August, 2021
10
November, 2020
9
June, 2019
8
January, 2021
7
August, 2020
7
November, 2018
5
March, 2019
5
October, 2017
4
February, 2020
3
August, 2018
3
November, 2017
3
October, 2022
1
August, 2022
1
June, 2018
Available data
11
bigWig
8
tsv
7
bam
3
bed narrowPeak
3
bedpe bed3+
3
hic
Organism
26
Homo sapiens
Biosample type
20
tissue
5
cell line
1
primary cell
Organ
22
pancreas
8
blood
8
bodily fluid
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
15
T1D
11
AMP
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
18
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
26 results
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Clear Filters
snATAC-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
4
2
2
2
pancreas
4
1
1
1
aorta
1
1
1
cell line
EndoC_BH1
2
2
1
primary cell
endothelial cell of umbilical vein
1
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