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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
total RNA-seq
104
ATAC-seq
53
ChIP-seq
33
pCHi-C
10
Hi-C
3
single cell RNA-seq
Assay category
163
Transcription
104
DNA accessibility
53
DNA binding
10
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
257
bam
238
bigWig
192
tsv
50
tagAlign
30
bed narrowPeak
12
bedpe bed3+
10
hic
3
fastq
2
ibed
Organism
363
Homo sapiens
Biosample type
233
tissue
106
primary cell
12
cell line
8
in vitro differentiated cells
4
stem cell
Organ
197
liver
15
pancreas
7
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
356
AMP
7
T1D
Genome assembly (visualization)
250
hg19
181
GRCh38
Lab
363
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
363 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
single cell RNA-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 28 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
HepG2
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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