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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
13
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
73
DNA binding
13
Transcription
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
histone
3
histone modification
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
103
bam
100
bigWig
88
fastq
76
bed narrowPeak
73
bigBed narrowPeak
45
tsv
12
bedpe bed3+
10
hic
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
ibed
1
csv
Organism
103
Homo sapiens
Biosample type
66
cell line
35
tissue
2
in vitro differentiated cells
Organ
54
liver
15
blood
15
bodily fluid
13
pancreas
9
spleen
3
epithelium
2
brain
2
heart
2
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
vasculature
Project
98
AMP
5
T1D
Genome assembly (visualization)
95
GRCh38
87
hg19
Lab
103
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
1
2
early embryonic cell
2
tissue
spleen
6
1
2
liver
4
1
2
body of pancreas
2
2
pancreas
1
2
1
brain
2
+ See 7 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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